with_AGI_gene
OMAT3P010880
0.75661900000000004152
<html><body><title>OMAT3P010880</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300108800000i/OMAT3P010880.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300108800000i/OMAT3P010880.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300108800000i/OMAT3P010880.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400061300000i">OMAT4P006130</a></td><td>0.968895</td><td>-</td><td>AT4G20110</td><td>vacuolar sorting receptor, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500176600000i">OMAT5P017660</a></td><td>0.960004</td><td>-</td><td>AT5G58375</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301070300000i">OMAT3P107030</a></td><td>0.956709</td><td>-</td><td>AT3G21260</td><td>glycolipid transfer protein-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300032500000i">OMAT3P003250</a></td><td>0.955125</td><td>-</td><td>AT3G09490</td><td>chloroplast lumen common family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200083900000i">OMAT2P008390</a></td><td>0.948089</td><td>-</td><td>AT2G34110</td><td>FUNCTIONS IN: molecular_function unknown</td><td>AT2G34080</td><td>cysteine proteinase, putative</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101001200000i">OMAT1P100120</a></td><td>0.947189</td><td>-</td><td>AT1G01340</td><td>ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101139200000i">OMAT1P113920</a></td><td>0.946286</td><td>-</td><td>AT1G56010</td><td>NAC1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101098300000i">OMAT1P109830</a></td><td>0.945368</td><td>-</td><td>AT1G31120</td><td>KUP10</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101107900000i">OMAT1P110790</a></td><td>0.944627</td><td>-</td><td>AT1G35255,AT1G35260</td><td>[AT1G35255]unknown protein, [AT1G35260]MLP165 (MLP-LIKE PROTEIN 165)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301039600000i">OMAT3P103960</a></td><td>0.943691</td><td>-</td><td>AT3G12090</td><td>TET6 (TETRASPANIN6)</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200114200000i">OMAT2P011420</a></td><td>-0.663517</td><td>-</td><td>AT2G42130</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501129200000i">OMAT5P112920</a></td><td>-0.583718</td><td>-</td><td>AT5G50250</td><td>31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500146900000i">OMAT5P014690</a></td><td>-0.57317</td><td>-</td><td>AT5G51180</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100188700000i">OMAT1P018870</a></td><td>-0.571628</td><td>-</td><td>AT1G67660</td><td>DNA binding / nuclease</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501012700000i">OMAT5P101270</a></td><td>-0.568251</td><td>-</td><td>AT5G05060</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500161500000i">OMAT5P016150</a></td><td>-0.55488</td><td>-</td><td>AT5G54770</td><td>THI1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400066500000i">OMAT4P006650</a></td><td>-0.554693</td><td>-</td><td>AT4G21750</td><td>ATML1 (MERISTEM LAYER 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100099300000i">OMAT1P009930</a></td><td>-0.550029</td><td>-</td><td>AT1G27950</td><td>LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100099400000i">OMAT1P009940</a></td><td>-0.544773</td><td>-</td><td>AT1G27950</td><td>LTPG1 (GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED LIPID PROTEIN TRANSFER 1)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300146200000i">OMAT3P014620</a></td><td>-0.544527</td><td>-</td><td>AT3G53530</td><td>heavy-metal-associated domain-containing protein</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300108800000i/OMAT3P010880-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0006952</td><td>defense response</td><td>17/200</td><td>3.73</td><td>8.65e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>4</td><td>GO:0006811</td><td>ion transport</td><td>12/200</td><td>4.96</td><td>1.12e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>B</td><td>3</td><td>GO:0006950</td><td>response to stress</td><td>29/200</td><td>2.34</td><td>6.55e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0006810</td><td>transport</td><td>24/200</td><td>2.34</td><td>3.63e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0051234</td><td>establishment of localization</td><td>24/200</td><td>2.34</td><td>3.81e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009607</td><td>response to biotic stimulus</td><td>11/200</td><td>3.04</td><td>3.07e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>10/200</td><td>2.30</td><td>4.58e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>50/200</td><td>2.06</td><td>1.68e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0016021</td><td>integral to membrane</td><td>10/200</td><td>3.25</td><td>2.91e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>113/200</td><td>1.23</td><td>8.86e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>13/200</td><td>2.42</td><td>1.08e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>4</td><td>GO:0020037</td><td>heme binding</td><td>12/200</td><td>6.86</td><td>2.77e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0046906</td><td>tetrapyrrole binding</td><td>12/200</td><td>6.29</td><td>7.54e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>25/200</td><td>2.96</td><td>3.71e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>31/200</td><td>2.28</td><td>5.27e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>31/200</td><td>2.16</td><td>1.66e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>31/200</td><td>2.16</td><td>1.66e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0015075</td><td>ion transmembrane transporter activity</td><td>10/200</td><td>3.19</td><td>3.43e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0022891</td><td>substrate-specific transmembrane transporter activity</td><td>12/200</td><td>2.72</td><td>5.34e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022892</td><td>substrate-specific transporter activity</td><td>13/200</td><td>2.52</td><td>7.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022857</td><td>transmembrane transporter activity</td><td>13/200</td><td>2.31</td><td>1.65e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>152/200</td><td>1.69</td><td>8.64e-20</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>32/200</td><td>13.71</td><td>4.29e-28</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>response</td><td>-</td><td>46/200</td><td>2.56</td><td>6.43e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>visible</td><td>-</td><td>18/200</td><td>4.86</td><td>7.38e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>36/200</td><td>2.74</td><td>9.77e-09</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>38/200</td><td>2.60</td><td>1.50e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>defense</td><td>-</td><td>17/200</td><td>4.87</td><td>1.70e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>52/200</td><td>2.15</td><td>2.24e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>38/200</td><td>2.51</td><td>3.89e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>37/200</td><td>2.52</td><td>5.68e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>50/200</td><td>2.11</td><td>7.08e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>19/200</td><td>3.84</td><td>1.46e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>oxygen</td><td>-</td><td>12/200</td><td>5.21</td><td>6.51e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>stage</td><td>-</td><td>41/200</td><td>2.12</td><td>1.19e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>electron</td><td>-</td><td>14/200</td><td>3.93</td><td>3.41e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>14/200</td><td>3.49</td><td>1.41e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transmembrane</td><td>-</td><td>19/200</td><td>2.62</td><td>4.47e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transport</td><td>-</td><td>22/200</td><td>2.26</td><td>1.22e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>major</td><td>-</td><td>10/200</td><td>3.50</td><td>1.56e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>13/200</td><td>2.73</td><td>3.34e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>39/200</td><td>1.69</td><td>3.64e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>class</td><td>-</td><td>15/200</td><td>2.50</td><td>3.72e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stimulus</td><td>-</td><td>12/200</td><td>2.79</td><td>4.29e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>conserved</td><td>-</td><td>26/200</td><td>1.92</td><td>4.79e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>22/200</td><td>2.01</td><td>6.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>dependent</td><td>-</td><td>25/200</td><td>1.87</td><td>9.12e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>integral</td><td>-</td><td>10/200</td><td>2.80</td><td>9.94e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>metabolic</td><td>-</td><td>22/200</td><td>1.92</td><td>1.22e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transporter</td><td>-</td><td>15/200</td><td>2.16</td><td>1.77e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stress</td><td>-</td><td>11/200</td><td>2.34</td><td>2.84e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>flower</td><td>-</td><td>15/200</td><td>1.96</td><td>4.44e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>region</td><td>-</td><td>24/200</td><td>1.66</td><td>5.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidoreductase</td><td>-</td><td>10/200</td><td>2.15</td><td>7.56e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>11/200</td><td>2.04</td><td>8.27e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>membrane</td><td>-</td><td>38/200</td><td>1.43</td><td>8.81e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>